92 lines
3.0 KiB
Docker
92 lines
3.0 KiB
Docker
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# Choose a base image. Debian is a good choice due to pyenv
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FROM debian:latest
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# Update the package list and install necessary dependencies
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RUN apt-get update && apt-get install -y \
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aptitude \
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tmux vim-nox nano mc git curl termshark procps \
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sudo iproute2 iputils-ping bridge-utils \
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ifupdown udev make build-essential libssl-dev zlib1g-dev \
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libbz2-dev libreadline-dev libsqlite3-dev wget llvm libncurses5-dev \
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libncursesw5-dev xz-utils libffi-dev liblzma-dev \
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sqlite3 default-libmysqlclient-dev pkg-config \
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npm
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# Set password for root user (optional, for configuration)
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RUN echo 'root:rootpass' | chpasswd
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# Add a new user `user` with password `pass` and prepare the environment
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RUN useradd -m user && echo 'user:pass' | chpasswd && adduser user sudo
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# Switch to user `user`
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USER user
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WORKDIR /home/user
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# Install pyenv
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RUN git clone https://github.com/pyenv/pyenv .pyenv
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# Install pyenv-virtualenv
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RUN git clone https://github.com/pyenv/pyenv-virtualenv .pyenv/plugins/pyenv-virtualenv
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# Set environment variables
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ENV HOME /home/user
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ENV PYENV_ROOT $HOME/.pyenv
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ENV PATH $PYENV_ROOT/shims:$PYENV_ROOT/bin:$PATH
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# Add pyenv and pyenv-virtualenv configuration to .bashrc
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RUN echo 'export PYENV_ROOT="$HOME/.pyenv"' >> .bashrc
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RUN echo 'export PATH="$PYENV_ROOT/bin:$PATH"' >> .bashrc
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RUN echo 'eval "$(pyenv init -)"' >> .bashrc
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RUN echo 'eval "$(pyenv virtualenv-init -)"' >> .bashrc
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# Install Python 3.11 with --enable-shared
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RUN bash -i -c "source ~/.bashrc && env PYTHON_CONFIGURE_OPTS='--enable-shared' pyenv install 3.11"
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# Create a virtual environment p3.11
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RUN bash -i -c "source ~/.bashrc && pyenv virtualenv 3.11 p3.11"
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# Set p3.11 as the default virtual environment
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RUN bash -i -c "source ~/.bashrc && pyenv local p3.11"
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# Install Poetry
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RUN curl -sSL https://install.python-poetry.org | python3 -
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# Add Poetry path to PATH directly in the Dockerfile
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ENV PATH="$HOME/.local/bin:$PATH"
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# Install SQLAlchemy and MySQL adapter in the pyenv environment
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RUN bash -i -c "source ~/.bashrc && pyenv activate p3.11 && pip install \
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sqlalchemy mysqlclient mysql-connector-python\
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ipython numpy scipy matplotlib \
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biopython"
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# Copy the project into the image
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COPY --chown=user:user . /home/user/fapi
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COPY ./_confs/* ./
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# Set the working directory for installing dependencies
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WORKDIR /home/user/fapi
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# Install project dependencies with Poetry in the p3.11 environment
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RUN bash -i -c "source ~/.bashrc && pyenv activate p3.11 && poetry install"
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#RUN bash -i -c "source ~/.bashrc && poetry config virtualenvs.create false && poetry install"
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# Copy the .vimrc file
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#COPY --chown=user:user .vimrc /home/user/.vimrc
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# Install vim-plug using curl
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RUN curl -fLo ~/.vim/autoload/plug.vim --create-dirs \
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https://raw.githubusercontent.com/junegunn/vim-plug/master/plug.vim
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# Install Vim plugins
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RUN vim +PlugInstall +qall
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# Run the application
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#CMD ["/bin/bash", "-c", "python entrypoint.py"]
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# Run Bash
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CMD ["/bin/bash"]
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