record.features

This commit is contained in:
mpabi 2024-06-12 22:09:19 +02:00
parent 787f19edb4
commit da06cb4ca6
1 changed files with 40 additions and 2 deletions

40
gfp2.py
View File

@ -81,6 +81,42 @@ for feature in record.features:
#%% #%%
#%%
# Przejdź przez wszystkie funkcje w rekordzie i wypisz ich szczegółowe informacje
for feature in record.features:
if feature.type in ["promoter", "RBS","CDS", "protein_bind", "misc_feature", "rep_origin"]:
print(f"Type: {feature.type}")
print(f"Location: {feature.location}")
print(f"Strand: {'+' if feature.strand == 1 else '-'}")
# Szczegółowe opisy
if feature.type == "CDS":
gene_name = feature.qualifiers.get('gene', ['Unknown gene'])[0]
product = feature.qualifiers.get('product', ['Unknown product'])[0]
print(f"Gene Name: {gene_name}")
print(f"Product: {product}")
elif feature.type == "protein_bind":
binding_site = feature.qualifiers.get('bound_moiety', ['Unknown binding site'])[0]
print(f"Binding Site: {binding_site}")
elif feature.type == "misc_feature":
note = feature.qualifiers.get('note', ['No additional information'])[0]
print(f"Note: {note}")
elif feature.type == "rep_origin":
print("This is a replication origin.")
# Pobierz sekwencję funkcji
feature_seq = record.seq[feature.location.start:feature.location.end]
print(f"Sequence ( ): {feature_seq}\n")
# Uwzględnij orientację nici (strand)
if feature.strand == -1:
feature_seq = feature_seq.reverse_complement()
print(f"Sequence (^): {feature_seq}\n")
# Znajdź i wyświetl sekwencję terminatora T7 # Znajdź i wyświetl sekwencję terminatora T7
for feature in record.features: for feature in record.features:
if feature.type == "terminator" and "T7" in feature.qualifiers.get('note', [''])[0]: if feature.type == "terminator" and "T7" in feature.qualifiers.get('note', [''])[0]:
@ -108,9 +144,11 @@ for feature in record.features:
if feature.strand == -1: if feature.strand == -1:
terminator_seq = terminator_seq.reverse_complement() terminator_seq = terminator_seq.reverse_complement()
print(f"Sequence: {terminator_seq}") print(f"(+) Sequence: {terminator_seq}")
print() print()
#%%
#%% #%%
t=record[25:73].seq t=record[25:73].seq